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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">vmait</journal-id><journal-title-group><journal-title xml:lang="ru">Computational Mathematics and Information Technologies</journal-title><trans-title-group xml:lang="en"><trans-title>Computational Mathematics and Information Technologies</trans-title></trans-title-group></journal-title-group><issn pub-type="epub">2587-8999</issn><publisher><publisher-name>Донской государственный технический университет</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.23947/2587-8999-2019-2-2-83-103</article-id><article-id custom-type="elpub" pub-id-type="custom">vmait-61</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>Статьи</subject></subj-group></article-categories><title-group><article-title>Математическое моделирование нелинейных эффектов в динамике взаимодействия планктонных и рыбных популяций Азовского моря</article-title><trans-title-group xml:lang="en"><trans-title>Mathematical modeling of nonlinear effects in dynamic of interacting plankton and fish populations of Azov Sea</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5875-1523</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Сухинов</surname><given-names>Александр Иванович</given-names></name><name name-style="western" xml:lang="en"><surname>Sukhinov</surname><given-names>Alexander Ivanovich</given-names></name></name-alternatives><bio xml:lang="ru"><p>Сухинов Александр Иванович, Донской государственный технический университет (344000 Ростов-на-Дону, пл. Гагарина, д. 1), доктор физико-математических наук, профессор</p></bio><bio xml:lang="en"><p>Sukhinov Alexander Ivanovich, Don State Technical University (1st Gagarin Square, Rostov-on-Don, Russian Federation), Doctor of Science in Physics and Maths, Professor</p></bio><email xlink:type="simple">sukhinov@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Сидорякина</surname><given-names>Валентина Владимировна</given-names></name><name name-style="western" xml:lang="en"><surname>Sidoryakina</surname><given-names>Valentina Vladimirovna</given-names></name></name-alternatives><bio xml:lang="ru"><p>Сидорякина Валентина Владимировна, Таганрогский институт им. А.П. Чехова (филиал) РГЭУ (РИНЭ) (347936 Таганрог, улица Инициативная, д. 48), кандидат физико-математических наук, доцент</p></bio><bio xml:lang="en"><p>Sidoryakina Valentina Vladimirovna, Taganrog Institute of A.P. Chekhov (branch) RSUE (Initiative Street, Taganrog, Russian Federation), Candidate of Science in Physics and Maths, Associate professor</p></bio><email xlink:type="simple">cvv9@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7257-962X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Никитина</surname><given-names>Алла Валерьевна</given-names></name><name name-style="western" xml:lang="en"><surname>Nikitina</surname><given-names>Alla Valeryevna</given-names></name></name-alternatives><bio xml:lang="ru"><p>Никитина Алла Валерьевна, Южный Федеральный Университет (347928, Россия, Ростовская область, г. Таганрог, пер. Некрасовский, 44), доктор технических наук, профессор</p></bio><bio xml:lang="en"><p>Nikitina Alla Valeryevna, Southern Federal University (Chekhov str., 2, Taganrog, Russian Federation), Doctor of Technical Science, Associate professor</p></bio><email xlink:type="simple">nikitina.vm@gmail.com</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-8323-6005</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чистяков</surname><given-names>Александр Евгеньевич</given-names></name><name name-style="western" xml:lang="en"><surname>Chistyakov</surname><given-names>Alexander Evgenievich</given-names></name></name-alternatives><bio xml:lang="ru"><p>Чистяков Александр Евгеньевич, Донской государственный технический университет (344000 Ростов-на-Дону, пл. Гагарина, д. 1), доктор физико-математических наук, доцент</p></bio><bio xml:lang="en"><p>Chistyakov Alexander Evgenievich, Don State Technical University (1st Gagarin Square, Rostov-on-Don, Russian Federation), Doctor of Science in Physics and Maths, Associate professor</p></bio><email xlink:type="simple">cheese_05@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Филина</surname><given-names>Алёна Александровна</given-names></name><name name-style="western" xml:lang="en"><surname>Filina</surname><given-names>Alena Aleksandrovna</given-names></name></name-alternatives><bio xml:lang="ru"><p>Филина Алёна Александровна, Научно-исследовательский центр супер-ЭВМ и нейрокомпьютеров (347900, Россия, Ростовская область, г. Таганрог, пер. Итальянский, дом 106), кандидат технических наук, научный сотрудник</p></bio><bio xml:lang="en"><p>Filina Alena Aleksandrovna, Supercomputers and Neurocomputers Research Center, Co Ltd. (Italyansky lane, 106, Taganrog, Russian Federation), Candidate of Technical Science, Researcher</p></bio><email xlink:type="simple">j.a.s.s.y@mail.ru</email><xref ref-type="aff" rid="aff-4"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-8234-3194</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Литвинов</surname><given-names>Владимир Николаевич</given-names></name><name name-style="western" xml:lang="en"><surname>Litvinov</surname><given-names>Vladimir Nikolaevich</given-names></name></name-alternatives><bio xml:lang="ru"><p>Литвинов Владимир Николаевич, Азово-Черноморский инженерный институт ФГБОУ ВО Донской ГАУ (РФ, г. Зерноград, ул. Ленина, 21), Кандидат технических наук, доцент.</p></bio><bio xml:lang="en"><p>Litvinov Vladimir Nikolaevich, Azov-Black Sea Engineering Institute of FSBEI HE Don State Agrarian University (21 Lenin st., Zernograd, Russian Federation), Candidate of Technical Sciences, Head of the Thermal Engineering and Information Management Systems department</p></bio><email xlink:type="simple">litvinovvn@rambler.ru</email><xref ref-type="aff" rid="aff-5"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Донской государственный технический университет &#13;
(344000 Ростов-на-Дону, пл. Гагарина, д. 1)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Don State Technical University &#13;
(1st Gagarin Square, Rostov-on-Don, Russian Federation)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Таганрогский институт им. А.П. Чехова (филиал) РГЭУ (РИНЭ) &#13;
(347936 Таганрог, улица Инициативная, д. 48)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Taganrog Institute of A.P. Chekhov (branch) RSUE &#13;
(Initiative Street, Taganrog, Russian Federation)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Южный Федеральный Университет &#13;
(347928, Россия, Ростовская область, г. Таганрог, пер. Некрасовский, 44)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Southern Federal University &#13;
(Chekhov str., 2, Taganrog, Russian Federation)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru"><institution>Научно-исследовательский центр супер-ЭВМ и нейрокомпьютеров &#13;
(347900, Россия, Ростовская область, г. Таганрог, пер. Итальянский, дом 106)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Supercomputers and Neurocomputers Research Center, Co Ltd. &#13;
(Italyansky lane, 106, Taganrog, Russian Federation)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-5"><aff xml:lang="ru"><institution>Азово-Черноморский инженерный институт ФГБОУ ВО Донской ГАУ &#13;
(РФ, г. Зерноград, ул. Ленина, 21)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Azov-Black Sea Engineering Institute of FSBEI HE Don State Agrarian University &#13;
(21 Lenin st., Zernograd, Russian Federation)</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2019</year></pub-date><pub-date pub-type="epub"><day>28</day><month>03</month><year>2023</year></pub-date><volume>3</volume><issue>2</issue><elocation-id>61</elocation-id><permissions><copyright-statement>Copyright &amp;#x00A9; Сухинов А.И., Сидорякина В.В., Никитина А.В., Чистяков А.Е., Филина А.А., Литвинов В.Н., 2023</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="ru">Сухинов А.И., Сидорякина В.В., Никитина А.В., Чистяков А.Е., Филина А.А., Литвинов В.Н.</copyright-holder><copyright-holder xml:lang="en">Sukhinov A.I., Sidoryakina V.V., Nikitina A.V., Chistyakov A.E., Filina A.A., Litvinov V.N.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.cmit-journal.ru/jour/article/view/61">https://www.cmit-journal.ru/jour/article/view/61</self-uri><abstract><p>Статья посвящена исследованию нелинейных эффектов в динамике популяций промысловой рыбы пеленгас Азовского моря в малых и больших размерах с учетом эффекта Аллее, конкуренции за ресурсы, отлова, пространственного распределения биогенного вещества и детрита на основе мультивидовой модели взаимодействия планктона и рыбы. Дискретный аналог разработанной модельной задачи водной экологии, входящий в программный комплекс, рассчитывался по схемам второго порядка точности с учетом частичного заполнения вычислительных ячеек. Система сеточных уравнений большой размерности, возникающих при дискретизации, была решена на основе двухслойного метода вариационного типа ‒ метода минимальных поправок, имеющего максимальную скорость сходимости. Разработаны эффективные параллельные алгоритмы для численной реализации задачи биологической кинетики, ориентированные на графический ускоритель NVIDIA Tesla K80 с модификацией формата хранения данных. В связи с этим процессы воспроизводства популяций биогеоценоза анализировались в реальном и ускоренном времени.</p></abstract><trans-abstract xml:lang="en"><p>Paper covers the research of nonlinear effects in population dynamics of the pelengas commercial fish of the Azov Sea at low and high size taking into account the Allee effect, competition for resources, taxis, catching, spatial distribution of biogenic matter and detritus based on a multi-species model of plankton and fish interaction. Discrete analogue of developed model problem of water ecology, included in a software complex, were calculated using schemes of second order of accuracy taking into account the partial filling of computational cells. The system of grid equations of large dimension, arising at discretization, has been solved on the basis of a two-layer variational type method – the minimum corrections method having the maximum convergence rate. Effective parallel algorithms were developed for numerical implementation of biological kinetics problem and oriented on NVIDIA Tesla K80 graphics accelerator with the data storage format modification. Due to it, the reproduction processes of biogeocenose populations have been analyzed in real and accelerated time.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>Эффект Allee</kwd><kwd>математическая модель взаимодействия популяций</kwd><kwd>биогидроценоз</kwd><kwd>Азовское море</kwd><kwd>пеленгас</kwd><kwd>детрит</kwd><kwd>параллельный алгоритм</kwd><kwd>модифицированный формат хранения данных</kwd><kwd>графический ускоритель</kwd><kwd>программное обеспечение</kwd></kwd-group><kwd-group xml:lang="en"><kwd>Allee effect</kwd><kwd>taxis</kwd><kwd>mathematical model of population interaction</kwd><kwd>biogydrocenosis</kwd><kwd>Azov Sea</kwd><kwd>pelengas</kwd><kwd>detritus</kwd><kwd>parallel algorithm</kwd><kwd>modified data storage format</kwd><kwd>graphics accelerator</kwd><kwd>software</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Lotka A.J. 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